http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&feed=atom&action=history
Philosophy of Biology Graduate Programs:About - Revision history
2024-03-29T05:59:18Z
Revision history for this page on the wiki
MediaWiki 1.25alpha
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=2073&oldid=prev
Shawn at 03:27, 11 December 2018
2018-12-11T03:27:30Z
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 03:27, 11 December 2018</td>
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<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Published on Nov. 19, 2014, </del>[http://philbio.net philbio.net] was created by <del class="diffchange diffchange-inline">[http://shamiller.net </del>Shawn <del class="diffchange diffchange-inline">A. </del>Miller<del class="diffchange diffchange-inline">]</del>, a Ph.D. candidate in <del class="diffchange diffchange-inline">the Department of Philosophy </del>and <del class="diffchange diffchange-inline">the Science & Technology Studies Program </del>at UC Davis. Reach him at [mailto:shamiller@ucdavis.edu shamiller@ucdavis.edu].</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[http://philbio.net philbio.net] was created <ins class="diffchange diffchange-inline">in 2014 </ins>by Shawn Miller, a Ph.D. candidate in <ins class="diffchange diffchange-inline">philosophy </ins>and <ins class="diffchange diffchange-inline">STS </ins>at UC Davis. Reach him at [mailto:shamiller@ucdavis.edu shamiller@ucdavis.edu<ins class="diffchange diffchange-inline">] or see [http://shamiller.net shamiller.net</ins>].</div></td></tr>
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Shawn
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=2066&oldid=prev
Shawn at 01:15, 11 December 2018
2018-12-11T01:15:37Z
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 01:15, 11 December 2018</td>
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Shawn
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=1998&oldid=prev
Shawn: Replaced content with "Published on Nov. 19, 2014, [http://philbio.net PhilBio.net] was created by [http://shamiller.net Shawn A. Miller], a [http://philosophy.ucdavis.edu/people/shamille Ph.D...."
2018-12-10T19:56:28Z
<p>Replaced content with "Published on Nov. 19, 2014, [http://philbio.net PhilBio.net] was created by [http://shamiller.net Shawn A. Miller], a [http://philosophy.ucdavis.edu/people/shamille Ph.D...."</p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 19:56, 10 December 2018</td>
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<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Published on Nov. 19, 2014, [http://philbio.net PhilBio.net] was created by [http://shamiller.net Shawn A. Miller], a [http://philosophy.ucdavis.edu/people/shamille Ph.D. candidate] in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. <del class="diffchange diffchange-inline">It is the basis of the Creative Commons template available </del>at <del class="diffchange diffchange-inline">[http://philwiki.net PhilWiki.net] that allows anyone to essentially clone this site.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Published on Nov. 19, 2014, [http://philbio.net PhilBio.net] was created by [http://shamiller.net Shawn A. Miller], a [http://philosophy.ucdavis.edu/people/shamille Ph.D. candidate] in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. <ins class="diffchange diffchange-inline">Reach hims </ins>at shamiller<ins class="diffchange diffchange-inline">@ucdavis</ins>.<ins class="diffchange diffchange-inline">edu</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Though there isn't any bleeding-edge technology running behind the scenes of PhilBio.net, the software is still a big part of the equation. Particularly notable is that all of the essential pieces running the server are open-source software. Nothing of what follows is necessary for using the site, but everyone who visits here and finds it useful owes a big debt of gratitude to those who wrote the software, and then gave it away for free.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">== What Server? ==</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">PhilBio.net runs on a server in San Francisco hosted by [http://digitalocean.com DigitalOcean] for a modest cost. PhilBio.net is actually a so-called ''virtual machine'', which means that it is an autonomous software entity that exists with other such entities on the same piece of hardware. Through software, the virtual machine is made to look like, and functions as, its very own computer. In this way, DigitalOcean and other cloud hosting services such as [https://www.linode.com/ linode] differ from web hosting services such as GoDaddy or Hostgator, where one basically rents hard drive space on a web server but does not have access to additional software programs.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">The following are the key open-source software pieces of the PhilBio.net virtual machine:</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== [http://www.mediawiki.org/wiki/MediaWiki MediaWiki v1.24.0] ===</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">This is the software that users and editors interact with most directly; it is the wiki server software. It is what you are looking at right now. MediaWiki was originally developed for use on Wikipedia and is available under a [https://gnu.org/licenses/gpl.html GNU General Public License (GPL)]. The software is written in PHP, and the installation file is a mere 20 MB.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== [http://ubuntu.com Ubuntu v14.04] ===</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">The operating system running PhilBio.net is Ubuntu [http://releases.ubuntu.com/14.04/ 14.04]. Ubuntu is a version of Linux, though 'GNU/Linux' is a more [https://www.gnu.org/gnu/gnu-linux-faq.html accurate term]. Operating systems are enormously complex and contain thousands of individual software programs. There are a variety of versions of Ubuntu, and they are all ''mostly'' open source. Even versions of Ubuntu that do not package free-standing propriety software programs&mdash;such as the version running this server&mdash;still contain proprietary software drivers, which are necessary for accessing the underlying proprietary hardware. This simply can't be helped.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== [http://httpd.apache.org/ Apache v2.4.7] ===</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Apache is web server&mdash;or HTTP server&mdash;software. It makes the resources of a computer visible and available to the outside world and is, thus, essential. Apache software is open source and available via its own [http://www.apache.org/licenses/ license]. [http://wiki.nginx.org/Main Nginx] is also open source server software.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== [http://www.mysql.com/ MySQL v5.5.40] ===</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">MySQL is database software. It is pronounced "My S-Q-L," not "My Sequel." The SQL stands for structure query language. When you save a wiki edit, create a page, or start an account, that information is stored in a MySQL database. [https://wordpress.org/ WordPress] blog posts are usually saved into MySQL databases, as well. The software is available under both open-source and proprietary licenses, though PhilBio.net obviously runs the open source variety.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== [http://php.net/ PHP v5.5.9] ===</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">PHP&mdash;which stands for PHP: Hypertext Preprocessor&mdash;is a programming language that was created by Rasmus Lerdorf in 1994. Much of the software running PhilBio.net is written in PHP, including MediaWiki. The server is able to execute PHP programs because the engine required to do this is open source. PHP is available under its own [http://php.net/license/ license].</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== Other Tools ===</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Since PhilBio.net is a virtual machine located miles away from its [http://</del>shamiller.<del class="diffchange diffchange-inline">net administrator], additional software tools are needed to connect to, maintain, and modify the server. Those, too, are open source, and include:</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* '''[http://www.openssh.com/ OpenSSH (Secure Shell)]''' allows users to connect to remote computers securely.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* '''[http://rsync.samba.org/ rsync]''' allows users to transfer files over, e.g., SSH.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* '''[http://gnometerminator.blogspot.com/p/introduction.html Terminator]''' is a terminal, that is, a program that users interact with by typing in commands.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* '''[http://tmux.sourceforge.net/ tmux]''' is a terminal multiplexer that allows users to run multiple programs inside one, e.g., Terminator terminal running OpenSSH.</del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* '''[http://www.vim.org/ vim]''' is a text editor. A great deal of the server maintenance done to PhilBio.net is simply editing text files</del>.</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div></div></td></tr>
</table>
Shawn
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=1949&oldid=prev
168.150.39.100 at 20:22, 26 November 2018
2018-11-26T20:22:42Z
<p></p>
<a href="http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=1949&oldid=1942">Show changes</a>
168.150.39.100
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=1942&oldid=prev
77.234.46.139 at 23:24, 1 October 2018
2018-10-01T23:24:10Z
<p></p>
<a href="http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=1942&oldid=1006">Show changes</a>
77.234.46.139
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=1006&oldid=prev
Shawn at 00:48, 16 December 2014
2014-12-16T00:48:06Z
<p></p>
<table class='diff diff-contentalign-left'>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 00:48, 16 December 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 1:</td>
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<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Published on Nov. 19, 2014, [http://philbio.net <del class="diffchange diffchange-inline">philbio</del>.net] was created by Shawn A. Miller, a Ph.D. candidate in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. It is the basis of the Creative Commons template available at [http://philwiki.net PhilWiki.net] that allows anyone to essentially clone this site.</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Published on Nov. 19, 2014, [http://philbio.net <ins class="diffchange diffchange-inline">PhilBio</ins>.net] was created by <ins class="diffchange diffchange-inline">[http://shamiller.net </ins>Shawn A. Miller<ins class="diffchange diffchange-inline">]</ins>, a <ins class="diffchange diffchange-inline">[http://philosophy.ucdavis.edu/people/shamille </ins>Ph.D. candidate<ins class="diffchange diffchange-inline">] </ins>in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. It is the basis of the Creative Commons template available at [http://philwiki.net PhilWiki.net] that allows anyone to essentially clone this site.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">The </del>site runs on an <del class="diffchange diffchange-inline">Ubuntu 14</del>.<del class="diffchange diffchange-inline">04 </del>virtual machine <del class="diffchange diffchange-inline">hosted by </del>[https://www.<del class="diffchange diffchange-inline">digitalocean</del>.com/ <del class="diffchange diffchange-inline">Digital Ocean</del>] in <del class="diffchange diffchange-inline">San Francisco</del>. Apache, <del class="diffchange diffchange-inline">PHP</del>, MySQL, and <del class="diffchange diffchange-inline">MediaWiki</del>&mdash;which <del class="diffchange diffchange-inline">runs Wikipedia</del>&mdash;<del class="diffchange diffchange-inline">are </del>the <del class="diffchange diffchange-inline">main </del>software <del class="diffchange diffchange-inline">pieces</del>. <del class="diffchange diffchange-inline">Contact Shawn at </del>[<del class="diffchange diffchange-inline">mailto</del>:<del class="diffchange diffchange-inline">shamiller@ucdavis</del>.<del class="diffchange diffchange-inline">edu shamiller@ucdavis.edu</del>] <del class="diffchange diffchange-inline">or visit </del>[http://shamiller.net <del class="diffchange diffchange-inline">shamiller</del>.net].</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">Though there isn't any bleeding-edge technology running behind the scenes of PhilBio.net, the software is still a big part of the equation. Particularly notable is that all of the essential pieces running the server are open-source software. Nothing of what follows is necessary for using the </ins>site<ins class="diffchange diffchange-inline">, but everyone who visits here and finds it useful owes a big debt of gratitude to those who wrote the software, and then gave it away for free.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">== What Server? ==</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">PhilBio.net </ins>runs on <ins class="diffchange diffchange-inline">a server in San Francisco hosted by [http://digitalocean.com DigitalOcean] for a modest cost. PhilBio.net is actually a so-called ''virtual machine'', which means that it is </ins>an <ins class="diffchange diffchange-inline">autonomous software entity that exists with other such entities on the same piece of hardware</ins>. <ins class="diffchange diffchange-inline">Through software, the </ins>virtual machine <ins class="diffchange diffchange-inline">is made to look like, and functions as, its very own computer. In this way, DigitalOcean and other cloud hosting services such as </ins>[https://www.<ins class="diffchange diffchange-inline">linode</ins>.com/ <ins class="diffchange diffchange-inline">linode</ins>] <ins class="diffchange diffchange-inline">differ from web hosting services such as GoDaddy or Hostgator, where one basically rents hard drive space on a web server but does not have access to additional software programs.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">The following are the key open-source software pieces of the PhilBio.net virtual machine:</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">=== [http://www.mediawiki.org/wiki/MediaWiki MediaWiki v1.24.0] ===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">This is the software that users and editors interact with most directly; it is the wiki server software. It is what you are looking at right now. MediaWiki was originally developed for use on Wikipedia and is available under a [https://gnu.org/licenses/gpl.html GNU General Public License (GPL)]. The software is written </ins>in <ins class="diffchange diffchange-inline">PHP, and the installation file is a mere 20 MB</ins>.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">=== [http://ubuntu.com Ubuntu v14.04] ===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">The operating system running PhilBio.net is Ubuntu [http://releases.ubuntu.com/14.04/ 14.04]. Ubuntu is a version of Linux, though 'GNU/Linux' is a more [https://www.gnu.org/gnu/gnu-linux-faq.html accurate term]. Operating systems are enormously complex and contain thousands of individual software programs. There are a variety of versions of Ubuntu, and they are all ''mostly'' open source. Even versions of Ubuntu that do not package free-standing propriety software programs&mdash;such as the version running this server&mdash;still contain proprietary software drivers, which are necessary for accessing the underlying proprietary hardware. This simply can't be helped.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">=== [http://httpd.apache.org/ </ins>Apache <ins class="diffchange diffchange-inline">v2.4.7] ===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">Apache is web server&mdash;or HTTP server&mdash;software. It makes the resources of a computer visible and available to the outside world and is</ins>, <ins class="diffchange diffchange-inline">thus</ins>, <ins class="diffchange diffchange-inline">essential. Apache software is open source and available via its own [http://www.apache.org/licenses/ license]. [http://wiki.nginx.org/Main Nginx] is also open source server software.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">=== [http://www.mysql.com/ </ins>MySQL <ins class="diffchange diffchange-inline">v5.5.40] ===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">MySQL is database software. It is pronounced "My S-Q-L</ins>,<ins class="diffchange diffchange-inline">" not "My Sequel." The SQL stands for structure query language. When you save a wiki edit, create a page, or start an account, that information is stored in a MySQL database. [https://wordpress.org/ WordPress] blog posts are usually saved into MySQL databases, as well. The software is available under both open-source </ins>and <ins class="diffchange diffchange-inline">proprietary licenses, though PhilBio.net obviously runs the open source variety.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">=== [http://php.net/ PHP v5.5.9] ===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">PHP</ins>&mdash;which <ins class="diffchange diffchange-inline">stands for PHP: Hypertext Preprocessor</ins>&mdash;<ins class="diffchange diffchange-inline">is a programming language that was created by Rasmus Lerdorf in 1994. Much of </ins>the software <ins class="diffchange diffchange-inline">running PhilBio</ins>.<ins class="diffchange diffchange-inline">net is written in PHP, including MediaWiki. The server is able to execute PHP programs because the engine required to do this is open source. PHP is available under its own </ins>[<ins class="diffchange diffchange-inline">http</ins>:<ins class="diffchange diffchange-inline">//php</ins>.<ins class="diffchange diffchange-inline">net/license/ license</ins>]<ins class="diffchange diffchange-inline">.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">=== Other Tools ===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">Since PhilBio.net is a virtual machine located miles away from its </ins>[http://shamiller.net <ins class="diffchange diffchange-inline">administrator], additional software tools are needed to connect to, maintain, and modify the server. Those, too, are open source, and include:</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* '''[http://www.openssh.com/ OpenSSH (Secure Shell)]''' allows users to connect to remote computers securely.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* '''[http://rsync.samba.org/ rsync]''' allows users to transfer files over, e.g., SSH.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* '''[http://gnometerminator.blogspot.com/p/introduction.html Terminator]''' is a terminal, that is, a program that users interact with by typing in commands.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* '''[http://tmux.sourceforge</ins>.net<ins class="diffchange diffchange-inline">/ tmux</ins>]<ins class="diffchange diffchange-inline">''' is a terminal multiplexer that allows users to run multiple programs inside one, e.g., Terminator terminal running OpenSSH.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* '''[http://www.vim.org/ vim]''' is a text editor. A great deal of the server maintenance done to PhilBio.net is simply editing text files</ins>.</div></td></tr>
</table>
Shawn
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=995&oldid=prev
Shawn at 21:17, 13 December 2014
2014-12-13T21:17:31Z
<p></p>
<table class='diff diff-contentalign-left'>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 21:17, 13 December 2014</td>
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<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Published on Nov. 19, 2014, philbio.net was created by Shawn A. Miller, a Ph.D. candidate in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. It is the basis of Creative Commons template available at [http://philwiki.net PhilWiki.net]<del class="diffchange diffchange-inline">, also created by Shawn</del>.</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Published on Nov. 19, 2014, <ins class="diffchange diffchange-inline">[http://</ins>philbio.net <ins class="diffchange diffchange-inline">philbio.net] </ins>was created by Shawn A. Miller, a Ph.D. candidate in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. It is the basis of <ins class="diffchange diffchange-inline">the </ins>Creative Commons template available at [http://philwiki.net PhilWiki.net] <ins class="diffchange diffchange-inline">that allows anyone to essentially clone this site</ins>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>The site runs on an Ubuntu 14.04 virtual machine hosted by [https://www.digitalocean.com/ Digital Ocean] in San Francisco. Apache, PHP, MySQL, and MediaWiki&mdash;which runs Wikipedia&mdash;are the main software pieces. Contact Shawn at [mailto:shamiller@ucdavis.edu shamiller@ucdavis.edu] or visit [http://shamiller.net shamiller.net].</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>The site runs on an Ubuntu 14.04 virtual machine hosted by [https://www.digitalocean.com/ Digital Ocean] in San Francisco. Apache, PHP, MySQL, and MediaWiki&mdash;which runs Wikipedia&mdash;are the main software pieces. Contact Shawn at [mailto:shamiller@ucdavis.edu shamiller@ucdavis.edu] or visit [http://shamiller.net shamiller.net].</div></td></tr>
</table>
Shawn
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=994&oldid=prev
Shawn at 21:14, 13 December 2014
2014-12-13T21:14:53Z
<p></p>
<table class='diff diff-contentalign-left'>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 21:14, 13 December 2014</td>
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<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">This site&mdash;published </del>on Nov. 19, 2014<del class="diffchange diffchange-inline">&mdash; </del>was created by Shawn A. Miller, a Ph.D. candidate in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. Contact <del class="diffchange diffchange-inline">him </del>at [mailto:shamiller@ucdavis.edu shamiller@ucdavis.edu] or visit [http://shamiller.net shamiller.net].</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">Published </ins>on Nov. 19, 2014<ins class="diffchange diffchange-inline">, philbio.net </ins>was created by Shawn A. Miller, a Ph.D. candidate in the Department of Philosophy and the Science & Technology Studies Program at UC Davis<ins class="diffchange diffchange-inline">. It is the basis of Creative Commons template available at [http://philwiki.net PhilWiki.net], also created by Shawn.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">The site runs on an Ubuntu 14.04 virtual machine hosted by [https://www.digitalocean.com/ Digital Ocean] in San Francisco. Apache, PHP, MySQL, and MediaWiki&mdash;which runs Wikipedia&mdash;are the main software pieces</ins>. Contact <ins class="diffchange diffchange-inline">Shawn </ins>at [mailto:shamiller@ucdavis.edu shamiller@ucdavis.edu] or visit [http://shamiller.net shamiller.net].</div></td></tr>
</table>
Shawn
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=407&oldid=prev
Shawn at 16:12, 24 November 2014
2014-11-24T16:12:39Z
<p></p>
<table class='diff diff-contentalign-left'>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 16:12, 24 November 2014</td>
</tr><tr><td colspan="2" class="diff-lineno">Line 1:</td>
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<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This site was created by Shawn A. Miller, a Ph.D. candidate in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. Contact him at <del class="diffchange diffchange-inline"> </del>[mailto:shamiller@ucdavis.edu shamiller@ucdavis.edu] or visit [http://shamiller.net shamiller.net].</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This site<ins class="diffchange diffchange-inline">&mdash;published on Nov. 19, 2014&mdash; </ins>was created by Shawn A. Miller, a Ph.D. candidate in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. Contact him at [mailto:shamiller@ucdavis.edu shamiller@ucdavis.edu] or visit [http://shamiller.net shamiller.net].</div></td></tr>
</table>
Shawn
http://philbio.net/index.php?title=Philosophy_of_Biology_Graduate_Programs:About&diff=234&oldid=prev
Shawn at 20:20, 20 November 2014
2014-11-20T20:20:40Z
<p></p>
<table class='diff diff-contentalign-left'>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 20:20, 20 November 2014</td>
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<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>This site was created by Shawn A. Miller, a Ph.D. candidate in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. Contact him at shamiller <del class="diffchange diffchange-inline">at </del>ucdavis <del class="diffchange diffchange-inline">dot </del>edu.</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>This site was created by Shawn A. Miller, a Ph.D. candidate in the Department of Philosophy and the Science & Technology Studies Program at UC Davis. Contact him at <ins class="diffchange diffchange-inline"> [mailto:</ins>shamiller<ins class="diffchange diffchange-inline">@</ins>ucdavis<ins class="diffchange diffchange-inline">.</ins>edu <ins class="diffchange diffchange-inline">shamiller@ucdavis.edu] or visit [http://shamiller.net shamiller.net]</ins>.</div></td></tr>
</table>
Shawn